Function reference • fbnet

All functions

Argentina_STRs: STRs allelic frequencies from Argentina.

bnet: Initialized bayesian network.

buildBN(): buildBN: a function for building the bayesian network.

buildCPTs(): buildCPTs: a function for building conditional probability tables based on pedigree bayesian network.

evidencePrunning(): evidencePrunning: a fuction for pruning instantiated variables.

factorHeteroFounders(): factorHeteroFounders: a function for multiplying probabilities in case of heterocigote founders.

fbnet: fbnet: Forensic Bayesian Networks

getConditional(): getConditional: a function for obtaining the coditional probability tables based on a given evidence.

getGenotypeTables(): getGenotypeTables: a function for obtaining genotypetables after variable elimination and using available genetic evidence.

getLocusCPT(): getLocusCPT: a function for obtaining the coditional probability table from a specific locus.

getMAP(): factorHeteroFounders: a function for multiplying probabilities in case of heterocigote founders.

getQSetRMP(): getGenotypeTables: a function for obtaining genotypetables after variable elimination and using available genetic evidence.

getValuesOut(): getValuesOut: a function for getting out variables with zero probability in the bayesian network

imposeEvidence(): imposeEvidence: a fuction for imposing evidence in the bayesian network.

minOrdering(): minOrdering: a function for getting an ordering of bayesian network variables not in Q using min fill criteria on interaction graphs.

pbn: Prepared pedigree for bayesian network trimming.

prodFactor(): prodFactor: a function for performing product between probability tables.

pruneNodes(): pruneNodes: a fuction for clasical pruning in bayesian networks.

removeEvidenceFromPed(): removeEvidenceFromPed: a function for removing evidence from specific individuals in a ped object.

reportLR(): reportLR: a function for calculating the LRs of specified genotypes in a pedigree.

reportPQ(): reportPQ: a function for calculating the probability of specified genotypes in a pedigree.

reverseSplit(): reverseSpit: a function for formatting.

setOrdering(): setOrdering: a function for selecting the ordering method in the elimination process.

stateRemoval(): stateRemoval: a function for processing the bayesian network.

stateRemoval2(): stateRemoval2: a function for processing the bayesian network. It implements another approach from the described in stateRemoval function.

stateRemovalSubnucs(): stateRemovalSubnucs: a fuctiong for variable state pruning.

sumFactor(): prodFactor: a function for performing sum between probability tables.

toybase: Toy allele frequency database.

toyped: STRs allelic frequencies from specified country.

velim.bn(): velim.bn: a function for variable elimination in a bayesian network.